PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.177230.1
Common NameCsa_3G710870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 316aa    MW: 34498 Da    PI: 9.0582
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.177230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.3e-29159218159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed++v++ tYegeHnh+
  Cucsa.177230.1 159 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSVEDQSVLVATYEGEHNHP 218
                     58***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-29152220IPR003657WRKY domain
PROSITE profilePS5081126.475154220IPR003657WRKY domain
SuperFamilySSF1182901.7E-25157220IPR003657WRKY domain
SMARTSM007741.1E-33159219IPR003657WRKY domain
PfamPF031061.7E-24160218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAAFSSWLLD SVDTKLDLNS VPLRFSGEPP KERNYMDVER KATVKEETGA LMEELKRVSA  60
ENKKLTEMLT VVCENYNTLR GHLMEQMNKN GEKEISSSKK RKSESSNNNN NMAGMNGNSE  120
SSSTDEESYK KPKEETISKS AKITRVQVKI GASDSNLVVK DGYQWRKYGQ KVTRDNPCPR  180
AYFKCSFAPS CPVKKKVQRS VEDQSVLVAT YEGEHNHPHP SQIEATSGGA AARSVNIAPA  240
VVSAAPGSSS AQAVSLDLVK AKPIAIMEAK TFANPKFDSP ELQQFLVEQM ASSLTKDPNF  300
TAALAAAISG KIFPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-201582201374WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840200.0GU984020.1 Cucumis sativus WRKY protein (WRKY21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292634.10.0probable WRKY transcription factor 40
SwissprotQ9SAH71e-100WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLA0A0A0L9M60.0A0A0A0L9M6_CUCSA; Uncharacterized protein
STRINGPOPTR_0001s03620.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-88WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]